Genealogies of mouse inbred strains. Strains Initial sequencing and analysis of the human genome. J. Appl. Both mouse deletion models of this syntenic interval67, containing four genes (Crhr1, Spplc2, Mapt, and Kansl1; Fig. Bioinformatics 22, 14371439 (2006). We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains and find extensive strain-specific haplotype variation. Genet. Ross DE, Marshall CW, Gulliver D, May HD, Norman RS. Google Scholar. Strain name in black/red indicates Aspergillus fumigatus resistant/susceptible. A digital atlas of gene expression patterns in the mouse: http://www.genepaint.org, A pipeline used to comparatively annotate the mouse strains for the Mouse Genomes Project: https://github.com/ucsc-mus-strain-cactus/MouseGenomesAnnotationPipeline, SGA String Graph Assembler a de novo genome assembler: https://github.com/jts/sga, SNAP Scalable Nucleotide Alignment Program a new sequence aligner: http://snap.cs.berkeley.edu, ImageJ an image processing toolkit: https://imagej.nih.gov/ij/. 1c) and are over-represented with genes associated with immunity, sensory, sexual reproduction and behavioral phenotypes (Fig. raphis strain . Nat. The previously annotated pseudogene model has been retained as a nonsense-mediated decay (NMD) transcript of the protein- coding locus. e, Box plot of sequence divergence (%)for LTRs, LINEs, and SINEs within and outside of hSNP regions. Science 343, 428432 (2014). The consensus gene sets were subsetted into a basic gene set following the methodology used by GENCODE60. Also, 62 new coding loci were added to the reference genome annotation. These windows were then intersected with GENCODE M8 gene annotations; the total number of unique genes and base pair positions overlapping pass windows for each strain was calculated (Fig. For CAST/EiJ, PWK/PhJ, and SPRET/EiJ, we further scaffolded the assemblies with Dovetail Genomics long-range libraries. Gene predictions from strain-specific RNA-Seq (Comparative Augustus24) added an average of 1,400 new isoforms to wild-derived and 1,207 new isoforms to classical strain gene annotation sets. Parasitology 142(Suppl, 1), S108S119 (2015). We used the C57BL/6J GRCm38 sequence as a single reference and found that 95% adjacent synteny block pairs from the assemblies were also adjacent in C57BL/6J reference. AskGrowers is not responsible for the accuracy of the information displayed. WebSeedFinders Cannabis-Genetic-Search Origin and genetic characteristics Here you can look for Cannabis Strains who have certain genetic characteristics. David Downs. The subsequent reads were used as input to SOAPdenovo273 r240 to produce genome scaffolds (parameters given in Supplementary Table 19). Terpenes are aromatic compounds found in cannabis and other plants that contribute to each strain's unique scent and flavor profile. Examining only repeat elements with less than 1% divergence, we found these regions are significantly enriched for LTRs (empirical P<1107) and LINEs (empirical P=0.047).
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